Welcome to XiaYun-Lab!

Biomedical Informatics Laboratory · Directed by Yun Xia · China Pharmaceutical University
中国药科大学 夏云 生物信息实验室
— Exploring Big Data, Biomedical Informatics, and Intelligent Drug Discovery —

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An AI/computing platform for biomedical research, integrating lab-hosted compute and services, AI tools, and representative research outputs. -Launched in 2025 · Maintained by Yun Xia

面向“人工智能通识+生物信息学实践”教学，XY-Lab平台汇集并持续完善自研课程包、练习与作业模板、标准化实践流程和统一计算环境配置；同时展示实验室建设的数据库、分析工具与阶段性科研产出，并整合本地部署的常用AI与计算工具入口，为师生提供一站式访问、学习与实践导航。平台v1.0版本于2025年上线，目前已更新至v5.11版本，最近一次更新为2026年10月10日，由夏老师持续维护。

AI Platforms & Computing Tools

Teaching: RStudio Server
R & Bioconductor
Researching: RStudio Server
R & Bioconductor
XY-Lab Password Strength—Password security assessment and strength analysis tool
Evaluate password strength, security risks, and improve account protection
Teaching: JupyterHub
Notebooks & Kernels
Researching: JupyterHub
Notebooks & Kernels
Teaching: Student Administration
Teaching: Student Administration
Teaching2: Student Administration
Teaching2: Student Administration
Teaching: Virtualization Console
Proxmox VE Web Console
Researching: Virtualization Console
Proxmox VE Web Console
Sshwifty
The elegant way to command your servers — anywhere
MiniCPM
Run efficient multimodal AI with MiniCPM
AI Voice Mimic
Generate natural, lifelike cloned voices with AI
VibeVoice
Generate expressive, natural speech with AI
ComfyUI
A powerful AI creation platform
Comfy Gallery
A visual gallery for exploring and managing AI-generated creations
AI Chat
Multi-model AI chat workspace for research and daily use
AlphaFold 3
AI for biomolecular structure & interactions
XY-Lab -License—License management and activation console
License issuance, activation, and device binding in one place
XY-Lab Token Center—API token management and usage control console
API token management, model access, and usage control in one place
XY-Lab API Center—Unified API access and key management console
Manage API keys, model access, usage, and service endpoints in one place

Agent & Databases & Tools

FigFlow—Updating; service may be temporarily unavailable.
Al workflows for scientific figures.
plotXY Online— Updating; service may be temporarily unavailable.
Easy, fast, and beautiful online plotting by XY-Lab. No installation, no coding!
plotXY Craft
Transform your scripts into PlotXY tools anyone can use with our AI agent.
OmicsForge AI— Updating; service may be temporarily unavailable.
AI-assisted omics platform generation and bioinformatics tool development.
scTIMEcomb—Updating; service may be temporarily unavailable.
Your portal for exploring single-cell data of immune checkpoint inhibitor combination therapy
ParmPath—Updating; service may be temporarily unavailable.
A web platform for phenotype-guided signature mining and candidate drug screening.
plotXY ---GSEA—Updating; service may be temporarily unavailable.
Gene Set Enrichment Analysis in One Page
Pert Atlas—Updating; service may be temporarily unavailable.
A platform for exploring transcriptional responses to small molecules
MolHuiTu
An intelligent drug–target interaction prediction platform powered by hypergraph masked autoencoders
ICBcomb—under the guidance of Guo-Lab
Immune Checkpoint Blockade Combination Therapy
ICBcDrug—under the guidance of Guo-Lab
A database of ICB combination Drugs
ICB Booster X—Coming Soon!
ICB-enhancing Small Molecules & Gene site

XY-Lab Classes: AI Foundations — Linux Series

Linux: 1. Introduction
What Linux is, why it matters, and how it is used in bioinformatics
Linux: 2. Basic knowledge
CPU, GPU, RAM, ROM, storage, and basic data units
Linux: 3. Virtual Machine Software Installation
Download and install VMware Workstation Pro for course virtual machines
Linux: 4. Ubuntu installation for windows
Installing Ubuntu on Windows and avoiding common setup issues
Linux: 5. Ubuntu installation for mac
Running Ubuntu on macOS using virtualization tools
Linux: 6. Command line
Essential commands: files, paths, pipes, and basic text operations
Linux: 7. RAID
RAID levels at a glance: combining multiple disks to improve performance, capacity, and/or fault tolerance
Linux: 8. Background & Parallel
nohup/disown, loops, GNU parallel, and xargs -P for safe batch jobs
Linux: 9. Environment Variables
env/export, startup files, and reproducible configs across sessions
Linux: 10. $PATH
Install pitfalls: wrong $PATH syntax, ordering, and “command not found” fixes
Linux: 11. Virtualization & Containers
VM vs container: images, isolation, volumes, networks, and common use cases

XY-Lab Classes: RNAseq Series

RNAseq: 1. Sequencing Evolution
Key milestones in sequencing technology evolution
RNAseq: 2. Illumina Sequencing Workflow
Step-by-step overview of Illumina library prep, sequencing, and data output
Tool: Conda
Secure, reproducible Python environments for AI with trusted packages
RNAseq: 3. Sequencing QC
Run quality checks on raw reads to detect issues early
RNAseq: 4. Sequencing QC Report
Interpret QC metrics and summarize results for troubleshooting
RNAseq: 5. Trimming
Remove adapters and low-quality bases to improve downstream accuracy
RNAseq: 6. Read Alignment
Map cleaned reads to a reference genome/transcriptome to locate their origin
RNAseq: 7. Gene Quantification
Count reads per gene/transcript to generate an expression matrix for analysis

News

honor

祝贺朱子琰在第十九届“挑战杯”中荣获全国特等奖！

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honor

恭喜林婉萍同学获评校优秀毕业论文！

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figure

优雅饼图

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XY-Lab
XY-Lab
Yun Xia - Lab Portrait

Welcome to

Yun Xia is an Associate Professor at China Pharmaceutical University and a Professor at the Hangzhou Institute for Innovative Drug Research, China Pharmaceutical University. He leads an interdisciplinary research team at the intersection of biomedical informatics, artificial intelligence, and intelligent drug discovery. Our research integrates large-scale multi-omics, single-cell, drug perturbation, and pharmacological data with AI and computational methods to understand tumor immunity and immunotherapy response, discover effective therapeutic combinations, and develop computational methods and data resources for next-generation drug discovery.

Join us! Resources
地址图片

ADDRESS

南京市江宁区龙眠大道639号 中国药科大学

EMAIL

hsiayun@foxmail.com

PHONE